torna al laboratorio di genetica molecolare

Pubblicazioni - 2002/2004

Cesareni G., Panni S., Nardelli G., Castagnoli L. (2002) Can we infer peptide recognition specificity mediated by SH3 domains? FEBS Lett., 513, 38-44.

Aasland R., Abrams C., Ampe C., Ball L.J., Bedford M.T., Cesareni G., Gimona M., Hurley J.H., Jarchau T., Lehto V.P., Lemmon M.A., Linding R., Mayer B.J., Nagai M., Sudol M., Walter U., Winder S.J. (2002) Normalization of nomenclature for peptide motifs as ligands of modular protein domains. FEBS Lett., 513, 141-144.

Fazi B., Cope M.J., Douangamath A., Ferracuti S., Schirwitz K., Zucconi A., Drubin D.G., Wilmanns M., Cesareni G., Castagnoli L. (2002) Unusual Binding Properties of the SH3 Domain of the Yeast Actin-binding Protein Abp1. STRUCTURAL AND FUNCTIONAL ANALYSIS. J. Biol. Chem., 277, 5290-5298.

Zanzoni A., Montecchi-Palazzi L., Quondam M., Ausiello G., Helmer-Citterich M., Cesareni G. (2002) MINT: a Molecular INTeraction database. FEBS Lett., 513, 135-140.

Fields S., Drees B., Hazbun R., Tucker C., Tong A.H., Evangelista M., Boone C., Nardelli G., Castagnoli L., Zucconi A., Cesareni G., Bader G., Hogue, C. (2002) Approaches to analyze protein interactions. Scient. World J., 2, 93-94.

Panni S., Dente L., Cesareni, G. (2002) In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules. J. Biol. Chem., 277, 21666-21674.

Tong A.H., Drees B., Nardelli G., Bader G.D. Brannetti B., Castagnoli L., Evangelista M., Ferracuti S., Nelson B., Paoluzi S., Quondam M., Zucconi A., Hogue C.W. Fields S., Boone C. , Cesareni G. (2002) A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science, 295, 321-324

Ciarapica R., Rosati J., Cesareni G., Nasi S. (2003) Molecular recognition in helix-loop-helix and helix-loop-helix-leucine zipper domains. Design of repertoires and selection of high affinity ligands for natural proteins. J. Biol. Chem., 278, 12182-12190.

Di Sano F., Fazi B., Citro G., Lovat P.E., Cesareni G., Piacentini M. (2003) Glucosylceramide synthase and its functional interaction with RTN-1C regulate chemotherapeutic-induced apoptosis in neuroepithelioma cells. Cancer Res ., 63, 3860-3865.

Puntervoll P., Linding R., Hunter W.N., Aasland R., Gibson, T.J. (2003) ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res., 31, 3625-3630.

Giovedi S., Vaccaro P., Valtorta F., Darchen F., Greengard P., Cesareni G., Benfenati F. (2004) Synapsin is a novel Rab3 effector protein on small synaptic vesicles. I. Identification and characterization of the synapsin I-Rab3 interactions in vitro and in intact nerve terminals. J. Biol. Chem., 279, 43760-43768.

Hermjakob H., Montecchi-Palazzi L., Bader G., Wojcik J., Salwinski L., Ceol A., Moore S., Orchard S., Sarkans U., von Mering C., Roechert B., Poux S., Jung E., Mersch H., Kersey P., Lappe M., Li Y., Zeng R., Rana D., Nikolski M., Husi H., Brun C., Shanker K., Grant S.G., Sander C., Bork P., Zhu W., Pandey A., Brazma A., Jacq B., Vidal M., Sherman D., Legrain P., Cesareni G., Xenarios I., Eisenberg D., SteipeB., Hogue, C., Apweiler, R. (2004) The HUPO PSI's molecular interaction format a community standard for the representation of protein interaction data. Nat. Biotechnol., 22, 177-183.

Hermjakob H., Montecchi-Palazzi L., Lewington C., Mudali S., Kerrien S., Orchard S., Vingron M., Roechert B., Roepstorff P., Valencia A., Margalit H., Armstrong J., Bairoch A., Cesareni G., Sherman D., Apweiler R. (2004) Intact: an open source molecular interaction database. Nucleic Acids Res.., 32 Database issue, D452-455.

Landgraf C., Panni S., Montecchi-Palazzi L., Castagnoli L., Schneider-Mergener J., Volkmer-Engert R., Cesareni G. (2004) Protein Interaction Networks by Proteome Peptide Scanning. PLOS Biol., 2, E14.

Papanikolau Y., Kotsifaki D., Fadouloglou V.E., Gazi A.D., Glykos N.M., Cesareni G., Kokkinidis M. (2004) Ionic strength reducers: an efficient approach to protein purification and crystallization. Application to two Rop variants. Acta Crystallogr. D., 60, 1334-1337.

Walchli S., Espanel X., Harrenga A., Rossi M., Cesareni G., Van Huijsduijnen R.H. (2004) Probing Protein-tyrosine Phosphatase Substrate Specificity Using a Phosphotyrosine-containing Phage Library. J. Biol. Chem., 279, 311-318.

Castagnoli L., Costantini A., Dall'Armi C., Gonfloni S., Montecchi-Palazzi L., Panni S., Paoluzi S., Santonico E., Cesareni G. (2004) Selectivity and promiscuity in the interaction network mediated by protein recognition modules. FEBS Lett., 567, 74-79.

Cesareni G., Gimona M., Sudol M., Yaffe M. (2004) Modular protein domains. Wiley-VCH Verlag GmbH & Co. KGaA,, Weinheim.